分子生物学
IVD分子诊断
细胞培养与分析
蛋白研究
细胞因子
重组蛋白
抗体
高通量测序建库
病原检测UCF系列
生物医药
工具酶
抑制剂激活剂与常用试剂
仪器
耗材

Identification of a 5-lncRNA-Based Signature for Immune Characteristics and Prognosis of Lung Squamous Cell Carcinoma and Verification of the Function of lncRNA SPATA41

Sheng Huan, Miao Chen, Sumin Sun, Yanling Zhong, Yu Chen, Yihao Ji, Guoping Yin

Journal:Frontiers in Genetics

IF:4.77

DOI:10.3389/fgene.2022.905353

PMID:36105081

Published:2022-08-29

research field:肿瘤学分子生物学药理学血液学

Abstract

Lung squamous cell carcinoma (LUSC) is one of the most lethal cancers worldwide. Traditional tumor-node-metastasis (TNM) staging system has many insufficiencies in predicting immune characteristics, overall survival (OS), and prognosis of LUSC. LncRNA is currently found involved in tumor development and effectively predicts tumor prognosis. We screened potential tumor-related lncRNAs for immune characteristics and constructed a nomogram combining lncRNA and traditional clinical indicators for prognosis prediction. We obtained the large-scale gene expression profiles of samples from 492 LUSC patients in The Cancer Genome Atlas database. SPATA41, {"type":"entrez-nucleotide","attrs":{"text":"AL034550.2","term_id":"4455434","term_text":"AL034550.2"}} AL034550.2 , {"type":"entrez-nucleotide","attrs":{"text":"AP003721.2","term_id":"28189463","term_text":"AP003721.2"}} AP003721.2 , {"type":"entrez-nucleotide","attrs":{"text":"AC106786.1","term_id":"18139336","term_text":"AC106786.1"}} AC106786.1 , and {"type":"entrez-nucleotide","attrs":{"text":"AC078889.1","term_id":"9743414","term_text":"AC078889.1"}} AC078889.1 were finally screened to construct a 5-lncRNA-based signature. The risk score of the signature divided patients into subgroups of high-risk and low-risk with significant differences in OS. Their area under the curve (AUC) reached more than 0.70 in 1, 3, and 5 years. In addition, compared with the high-risk subgroup, the low-risk subgroup exhibited a remarkably favorable prognosis and TME score, along with a higher immune infiltration score and lower TIDE score. The signature also significantly related to chemotherapy response, especially in cisplatin, vinorelbine, and paclitaxel. Importantly, the nomogram we constructed had good reliability with the assessment of the calibration chart and consistency index (c-index). GO and KEGG enrichment analysis indicated t

本文使用的Yeasen产品

购物车
客服
转染试用