Identification of a 5-lncRNA-Based Signature for Immune Characteristics and Prognosis of Lung Squamous Cell Carcinoma and Verification of the Function of lncRNA SPATA41
Sheng Huan, Miao Chen, Sumin Sun, Yanling Zhong, Yu Chen, Yihao Ji, Guoping Yin
Journal:Frontiers in Genetics
IF:4.77
DOI:10.3389/fgene.2022.905353
PMID:36105081
Published:2022-08-29
research field:肿瘤学分子生物学药理学血液学
Abstract
Lung squamous cell carcinoma (LUSC) is one of the most lethal cancers worldwide. Traditional tumor-node-metastasis (TNM) staging system has many insufficiencies in predicting immune characteristics, overall survival (OS), and prognosis of LUSC. LncRNA is currently found involved in tumor development and effectively predicts tumor prognosis. We screened potential tumor-related lncRNAs for immune characteristics and constructed a nomogram combining lncRNA and traditional clinical indicators for prognosis prediction. We obtained the large-scale gene expression profiles of samples from 492 LUSC patients in The Cancer Genome Atlas database. SPATA41, {"type":"entrez-nucleotide","attrs":{"text":"AL034550.2","term_id":"4455434","term_text":"AL034550.2"}} AL034550.2 , {"type":"entrez-nucleotide","attrs":{"text":"AP003721.2","term_id":"28189463","term_text":"AP003721.2"}} AP003721.2 , {"type":"entrez-nucleotide","attrs":{"text":"AC106786.1","term_id":"18139336","term_text":"AC106786.1"}} AC106786.1 , and {"type":"entrez-nucleotide","attrs":{"text":"AC078889.1","term_id":"9743414","term_text":"AC078889.1"}} AC078889.1 were finally screened to construct a 5-lncRNA-based signature. The risk score of the signature divided patients into subgroups of high-risk and low-risk with significant differences in OS. Their area under the curve (AUC) reached more than 0.70 in 1, 3, and 5 years. In addition, compared with the high-risk subgroup, the low-risk subgroup exhibited a remarkably favorable prognosis and TME score, along with a higher immune infiltration score and lower TIDE score. The signature also significantly related to chemotherapy response, especially in cisplatin, vinorelbine, and paclitaxel. Importantly, the nomogram we constructed had good reliability with the assessment of the calibration chart and consistency index (c-index). GO and KEGG enrichment analysis indicated t
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