Integrative circRNA landscape of intrauterine adhesions: putative ceRNA axes and circRNA-associated splicing usage linked to contractility and immunity
Yingqing Chen, Jing Jin, Ying Xiang, Yanping Wang, Shuang Wu, Ni Zhan, Mengxin Xiong, Ali Deng
Journal:Frontiers in Molecular Biosciences
IF:4
DOI:10.3389/fmolb.2026.1763980
PMID:
Published:2026-04-02
research field:分子生物学生物信息学非编码RNA研究生殖医学基因组学
Abstract
BackgroundIntrauterine adhesions (IUA) are fibrotic scars that impair endometrial regeneration, and compromise fertility. Emerging evidence implicates circular RNAs (circRNAs) in fibrotic remodeling, but it remains unclear how the circRNA landscape and circRNA-associated splicing programs coordinately link uterine contractility, endometrial cell-cycle control, and immune activation in IUA.MethodsTo address this question, we reanalyzed rRNA-depleted RNA sequencing data from IUA and controls (GSE224093) to assemble a high-confidence circRNA catalog using four independent circRNA callers, identify differential expression, and construct direction-consistent circRNA–miRNA–mRNA competing endogenous RNA (ceRNA) circuits. Gene set enrichment and CIBERSORT-based deconvolution were combined to relate circRNA modules to smooth muscle contractility, proliferative programs, and macrophage phenotypes. CircRNA-associated splicing (CAS) usage was quantified with SUVA to detect IUA-related shifts in back-splicing versus canonical splicing, and CAS–RNA-binding protein (RBP) co-expression networks were delineated using differentially expressed RBPs. Selected circRNAs, mRNAs, and RBPs were validated in an independent cohort of IUA and non-IUA endometrial samples by back-splice junction–spanning RT-qPCR and Western blotting.ResultsWe identified 1,724 high-confidence circRNAs arising from 1,143 host genes. ceRNA integration highlighted an upregulated circRNA, hsa-KDM4B_0007, converging on smooth muscle contractility genes MYH11 and PPP1R12B, and downregulated circRNAs hsa-LPAR3_0001 and hsa-PPFIA1_0013 converging on cell-cycle regulators CDC6 and CDCA5. Immune deconvolution indicated expansion of both M1 and M2 macrophages in IUA, and several DECs (e.g., hsa-PLOD2_0001 and hsa-FAM13B_0009) were tightly correlated with M1-enriched inflammatory signatures. CAS profiling uncovered widespread
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