Genome-wide identification of m6A methyltransferase genes and m6A modification participates in the response to cold stress in rice
Shihuan He, Jinxi Xiang, Rui Wang, Zichan Ye, Yue Zhang, Yunxia Fang, Xiaoqin Zhang, Jian Zhang, Xiaoguang Chen, Dawei Xue
Journal:Frontiers in Plant Science
IF:5.9
DOI:10.3389/fpls.2026.1804596
PMID:42052270
Published:2026-04-13
research field:植物分子生物学生物信息学胁迫生理学基因组学表观遗传学
Abstract
RNA modification is crucial for the post-transcriptional regulatory mechanism that plays a pivotal role in determining RNA structure and function. Among these, N6-methyladenosine (m 6 A) represents the most abundant one in eukaryotic mRNA. In plants, m 6 A modification is catalyzed by a complex comprising multiple methyltransferase components. In this study, bioinformatic analyses were employed to characterize the genes of m 6 A methyltransferases (m 6 A writers), including their physicochemical properties, structures, cis -acting elements, chromosomal distributions, phylogenetic relationships, and predicted protein structures. Moreover, qRT-PCR and LC-MS/MS were utilized to investigate the expression patterns of m 6 A writer genes as well as the m 6 A abundance in total RNA from rice seedlings under low-temperature conditions. Additionally, m 6 A me-RIP sequencing was performed to explore changes in the m 6 A profile of mRNA in rice under cold stress. Collectively, our findings revealed the involvement in the regulation of mRNA m 6 A modification under cold stress in rice.
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