Genome-Wide Analysis of YTH Domain Proteins in Metasequoia glyptostroboides and Functional Validation of MgYTH5 as an m6A Reader
Bao Li, Xin Hu, Wenhui Guo, Huijuan Yin, Yuke Ma, Kongshu Ji, Qiong Yu
Journal:Plants-Basel
IF:4.7
DOI:10.3390/plants15101497
PMID:
Published:2026-05-14
research field:分子生物学植物学生物信息学植物遗传学RNA生物学表观遗传学
Abstract
N6-methyladenosine (m6A) is an important epigenetic modification of eukaryotic RNA, playing a significant role in various biological processes.Metasequoia glyptostroboides(M. glyptostroboides) is an ancient tree species in China, with a long history and excellent genetic characteristics. In this study, we identified sixMgYTHgenes in the genome ofM. glyptostroboides, elucidating their phylogenetic relationships, conserved domains, gene structures, conserved motifs, chromosome locations, and prediction of LLPS. The analysis of the cis-regulatory elements in the promoter region suggested thatMgYTHgenes are associated with drought and the ABA-responsive expression patterns signaling pathway, which was further supported by expression pattern analysis. In addition, to directly evaluate the m6A binding ability of MgYTH proteins, we selected MgYTH5 as the representative for homology modeling analysis and electrophoretic mobility shift assay (EMSA). The results demonstrated that MgYTH5 has the ability to bind m6A in vitro, thereby providing biochemical evidence that MgYTH5 can bind m6A-modified RNA in vitro mRNAs. The subcellular localization results showed that MgYTH5 is located in the cytoplasm. These findings provide new insights into the epigenetic regulation mechanisms in gymnosperms and provide a resource for future functional studies in this species.
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