分子生物学
IVD分子诊断
细胞培养与分析
蛋白研究
细胞因子
重组蛋白
抗体
高通量测序建库
病原检测UCF系列
生物医药
工具酶
抑制剂激活剂与常用试剂
仪器
耗材

Integrative multi-omics and machine learning reveals the spatial niche distribution and role of CYP27A1+TAMs in immunotherapy response in non-small cell lung cancer

Qingsheng Liu, Xufeng Liu, Han Zhang, Yuhang Jiang, Ying Shi, Qiuqiao Mu, Yuhao Jing, Daqiang Sun

Journal:Frontiers in Immunology

IF:5.9

DOI:10.3389/fimmu.2026.1782545

PMID:

Published:2026-02-26

research field:肿瘤学生物信息学精准医学免疫学系统生物学

Abstract

Background The response rate to immune checkpoint blockade (ICB) in non-small cell lung cancer (NSCLC) varies significantly among individuals. Cancer-associated macrophages (TAMs) are key components of the tumor immune microenvironment (TIME), influencing tumor proliferation, metastasis, immune cell recruitment, and activation through diverse mechanisms. Their high heterogeneity, particularly in the context of immunotherapy, warrants further investigation. Methods We integrated single-cell and spatial transcriptomic data from the same patients using ISCHIA to construct nine spatial niches(local cellular communities). The composition of these niches was compared across different spatial regions and between samples with varying ICB treatment responses. CYP27A1+TAMs, identified as critical in ICB-responsive groups, were validated through external cohorts, immunohistochemistry, immunofluorescence, and in vivo experiments. Results Spatial niche analysis revealed that niche 9, which was enriched with effector cells, was found exclusively in ICB responders. CYP27A1+TAMs were a key component of this niche, recruiting CD8+T cells via antigen presentation and chemokine secretion, thereby improving patient prognosis. Based on this, we developed an accurate prognostic model. Following ICB treatment, these macrophages exhibited further activation of LXR and enhanced anti-apoptotic capabilities. In vivo and morphological experiments demonstrated that CYP27A1+TAMs effectively suppressed tumor growth and increased CD8+T cells infiltration in the TIME. Conclusion This study highlights the importance of spatial niches in understanding the TIME of NSCLC and predicting ICB responses. CYP27A1+TAMs and their downstream LXR pathway provide a novel research direction for exploring potential biomarkers for personalized NSCLC management.

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