分子生物学
IVD分子诊断
细胞培养与分析
蛋白研究
细胞因子
重组蛋白
抗体
高通量测序建库
病原检测UCF系列
生物医药
工具酶
抑制剂激活剂与常用试剂
仪器
耗材

Preclinical analysis of novel prognostic transcription factors and immune‑related gene signatures for bladder cancer via TCGA‑based bioinformatic analysis

Yuyou Deng, Xin Hong, Chengfan Yu, Hui Li, Qiang Wang, Yi Zhang, Tian Wang, Xiaofeng Wang

Journal:Oncology Letters

IF:2.97

DOI:10.3892/ol.2021.12605

PMID:33747201

Published:2021-03-03

research field:药物递送系统生物医学工程心血管研究药学纳米技术

Abstract

Bladder cancer (BLCA) is a common malignancy of human urinary tract, whose prognosis is influenced by complex gene interactions. Immune response activity can act as a potential prognostic factor in BLCA. The present study established a prognostic model, based on the identification of tumor transcription factors (TFs) and immune‑related genes (IRGs), and further explored their therapeutic potential in BLCA. The enrichment scores of 29 IRG sets, identified in The Cancer Genome Atlas BLCA tumor samples, were quantified by single‑sample Gene Set Enrichment Analysis. The abundance of infiltrated immune cells in tumor tissues was determined using the Estimating Relative algorithm. Tumor‑related TFs and IRGs signatures were retrieved using Least Absolute Shrinkage and Selection Operator Cox regression analysis. A prognostic gene network was built using Pearson's correlation analysis as a means of predicting the regulatory relationship between prognostic TFs and IRGs. A nomogram was devised to also predict the overall survival (OS) rate of patients with BLCA. Based on the Genomics of Drug Sensitivity in Cancer data, potential therapeutic drugs were identified upon analyzing the relationship between the expression level of prognostic genes and respective IC<sub>50</sub> values. <em>In vitro</em> experiments were implemented for further validation. Respective TF binding profiles were acquired from the JASPAR 2020 database. The elevated infiltration of CD8<sup>+</sup> T Cells was correlated with an improved OS of patients with BLCA. An innovative prognostic model for BLCA was then constructed that composed of nine putative gene markers: <em>CXCL13</em>, prepronociceptin, microtubule‑associated protein tau, major histocompatibility class I polypeptide‑related sequence B, prostaglandin E2 receptor EP3 subtype, <em>IL20RA</em>, proepiregulin, early growth response protein 1 and FOS‑related antigen 1 (<em>FOSL1</em>). Furthermore, a theoretical basis for the correlation between t

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