Transcriptome-wide profiling of N6-methyladenosine via a selective chemical labeling method
Yalun Xie, Shaoqing Han, Qiming Li, Zhentian Fang, Wei Yang, Qi Wei, Yafen Wang, Yu Zhou, Xiaocheng Weng, Xiang Zhou
Journal:Chemical Science
IF:9.97
DOI:10.1039/D2SC03181G
PMID:36349098
Published:2022-10-05
research field:
Abstract
Studies of chemical modifications on RNA have ushered in the field of epitranscriptomics. N6-Methyladenosine (m6A) is the most typical RNA modification and is indispensable for basic biological processes. This study presents a chemical pulldown method (m6A-ORL-Seq) for transcriptome-wide profiling of m6A. Moreover, chemical labeling results in a specific reverse transcription (RT) truncation signature. This study has identified four thousand high-confidence m6A sites at single-base resolution in the human transcriptome. Unlike previously reported methods based on m6A-antibody or m6A-sensitive enzymes, the antibody/enzyme-free chemical method provides a new perspective for single-base m6A detection at the transcriptome level.
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