分子生物学
IVD分子诊断
细胞培养与分析
蛋白研究
细胞因子
重组蛋白
抗体
高通量测序建库
病原检测UCF系列
生物医药
工具酶
抑制剂激活剂与常用试剂
仪器
耗材

A systematic genome-wide analysis and screening of the NAC family genes related to wood formation in Cinnamomum camphora

Hanbin Lin, Xiaoyue Luan, Caihui Chen, Xue Gong, Xiuqi Li, Huihu Li, Zhaoxiang Wu, Qiaoli Liu, Meng Xu, Yongda Zhong

Journal:GENOMICS

IF:4.4

DOI:10.1016/j.ygeno.2023.110631

PMID:37120099

Published:2023-04-28

research field:植物生物学分子遗传学进化生物学基因组学

Abstract

Many processes, such as growth, aging, and adaptation to abiotic stress, are regulated in plants by NAC transcription factors. In woody plants, NAC transcription factors acts as a primary switch that regulates secondary xylem development by activating various downstream transcription factors and modulating expression levels of genes involved in the synthesis of the secondary cell wall. Our team had previously sequenced the whole genome of the camphor tree ( Cinnamomum camphora ). Here, we performed a detailed analysis of the NAC gene family of C. camphora and examined its evolutionary history. The genomic sequences of 121 NAC genes of C. camphora were identified and classified into 20 subfamilies in 2 major classes based on the phylogenetic analysis and structural features. Expansion of the CcNAC gene family occurred mainly by fragment replication and was influenced by the purifying selection. By analyzing predicted interactions of the homologous AtNAC proteins, we identified five CcNACs that potentially regulate xylem development in C. camphora . RNA sequencing revealed distinct expression profiles of CcNACs in seven different plant tissues. Subcellular localization prediction revealed that 120, 3, and 2 CcNACs have biological functions in the nucleus, cytoplasm, and chloroplast, respectively. Furthermore, we verified expression patterns of five CcNACs ( CcNAC012 , CcNAC028 , CcNAC055 , CcNAC080 , and CcNAC119 ) in various tissue types using qRT-PCR. Our results will facilitate further in-depth studies of the molecular mechanisms by which CcNAC transcription factors regulate wood formation and other processes in C. camphora .

本文使用的Yeasen产品

购物车
客服
转染试用